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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
209
ChIP-seq
27
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
2
pCHi-C
1
FAIRE-seq
1
RRBS
Assay category
209
DNA binding
32
DNA accessibility
21
Transcription
1
DNA methylation
Target of assay
184
histone
184
histone modification
114
narrow histone mark
70
broad histone mark
25
control
Date released
86
October, 2019
82
November, 2017
28
May, 2019
25
June, 2019
16
October, 2017
12
February, 2020
11
July, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
265
Homo sapiens
Biosample type
265
tissue
primary cell
Organ
774
liver
574
pancreas
314
heart
310
kidney
265
brain
193
connective tissue
133
blood vessel
133
vasculature
116
limb
103
adipose tissue
92
epithelium
82
musculature of body
73
artery
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
265
AMP
Genome assembly (visualization)
203
GRCh38
143
hg19
Lab
265
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
files.file_type!
zippedFastqFolder
month_released!
February, 2021
BIOSAMPLE
ASSAY
265 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
pCHi-C
FAIRE-seq
RRBS
tissue
brain
20
14
1
1
1
layer of hippocampus
23
caudate nucleus
15
1
1
substantia nigra
16
1
temporal lobe
15
1
1
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