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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
457
total RNA-seq
90
ChIP-seq
3
ATAC-seq
3
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
459
Transcription
90
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
39
transcription factor
26
histone
26
histone modification
25
control
13
narrow histone mark
12
broad histone mark
9
RNA binding protein
2
chromatin remodeller
Date released
448
February, 2021
71
August, 2017
23
October, 2018
10
July, 2019
1
June, 2019
1
May, 2021
1
November, 2018
1
November, 2019
1
October, 2017
Available data
557
bam
538
bigWig
463
tsv
98
fastq
58
bed narrowPeak
22
tagAlign
19
bed bed3+
13
bigBed narrowPeak
5
bed bed3
4
bed bedgraph
4
bed broadPeak
3
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
557
Homo sapiens
Biosample type
498
tissue
59
in vitro differentiated cells
primary cell
Organ
666
liver
557
connective tissue
495
pancreas
440
adipose tissue
226
brain
199
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
75
epithelium
66
bone element
60
blood
60
bodily fluid
44
musculature of body
42
nerve
embryo
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
557
AMP
Genome assembly (visualization)
533
GRCh38
531
hg19
Lab
557
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
primary cell
files.file_type!
tar
organ_slims!
embryo
BIOSAMPLE
ASSAY
557 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
2
2
bone tissue
58
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
2
1
white adipose tissue
12
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in vitro differentiated cells
adipocyte
4
53
1
cardiac fibroblast
1
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