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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
69
DNase-seq
37
ChIP-seq
5
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
70
DNA accessibility
37
DNA binding
6
Transcription
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
68
June, 2019
23
April, 2019
19
October, 2019
3
July, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
113
Homo sapiens
Biosample type
98
tissue
primary cell
15
cell line
Organ
677
liver
492
connective tissue
425
adipose tissue
374
pancreas
240
heart
227
brain
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
77
epithelium
66
bone element
61
blood
61
bodily fluid
45
musculature of body
42
nerve
37
embryo
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
113
AMP
Genome assembly (visualization)
102
GRCh38
102
hg19
Lab
113
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
biosample_type!
primary cell
month_released!
August, 2017
BIOSAMPLE
ASSAY
113 results
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DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney
13
27
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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