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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
total RNA-seq
20
ChIP-seq
16
ATAC-seq
16
small RNA-seq
9
WGBS
2
FAIRE-seq
Assay category
54
Transcription
20
DNA binding
18
DNA accessibility
9
DNA methylation
Target of assay
13
histone
13
histone modification
7
control
7
narrow histone mark
6
broad histone mark
Date released
569
February, 2021
383
November, 2017
224
August, 2017
219
October, 2019
193
May, 2020
163
June, 2019
126
May, 2021
116
July, 2018
115
May, 2019
87
November, 2018
81
December, 2017
79
April, 2019
74
October, 2018
64
July, 2019
59
November, 2019
37
August, 2021
34
December, 2018
30
January, 2019
26
February, 2018
24
May, 2022
16
March, 2020
15
October, 2017
6
April, 2018
6
September, 2017
1
March, 2019
Available data
162
tsv
110
bed narrowPeak
101
bam
99
bigWig
64
xls
57
txt
20
tagAlign
14
bed bedMethyl
14
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
bigBed narrowPeak
2
hic
1
vcf
Organism
101
Homo sapiens
Biosample type
64
tissue
37
in vitro differentiated cells
primary cell
Organ
17
heart
10
adipose tissue
10
brain
10
connective tissue
embryo
7
blood vessel
7
liver
7
vasculature
4
pancreas
3
kidney
3
musculature of body
1
artery
1
limb
Project
101
AMP
Genome assembly (visualization)
91
GRCh38
83
hg19
Lab
101
AMP-T2D consortium
biosample_type!
primary cell
organ_slims!
embryo
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
WGBS
FAIRE-seq
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
heart
2
1
1
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in vitro differentiated cells
neural progenitor cell
7
20
10
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