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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1336ChIP-seq
  • 1132total RNA-seq
  • 180DNase-seq
  • 91ATAC-seq
  • 18WGBS
  • 16small RNA-seq
  • 6single cell RNA-seq
  • 4FAIRE-seq
Assay category
  • 1336DNA binding
  • 1154Transcription
  • 275DNA accessibility
  • 18DNA methylation
Target of assay
  • 582histone modification
  • 581histone
  • 475transcription factor
  • 302narrow histone mark
  • 278broad histone mark
  • 274control
  • 93RNA binding protein
  • 89recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 569February, 2021
  • 383November, 2017
  • 224August, 2017
  • 219October, 2019
  • 193May, 2020
  • 163June, 2019
  • 128May, 2021
  • 116July, 2018
  • 115May, 2019
  • 94December, 2017
  • 87November, 2018
  • 79April, 2019
  • 74October, 2018
  • 64July, 2019
  • 59November, 2019
  • 45August, 2021
  • 39February, 2018
  • 34December, 2018
  • 30January, 2019
  • 24May, 2022
  • 16March, 2020
  • 15October, 2017
  • 6April, 2018
  • 6September, 2017
  • 1March, 2019
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2776Homo sapiens
Biosample type
  • 1907tissue
  • primary cell
  • 582cell line
  • 291in vitro differentiated cells
  • 3stem cell
Organ
  • 669liver
  • 557connective tissue
  • 495pancreas
  • 440adipose tissue
  • 226brain
  • 199heart
  • 153blood vessel
  • 153vasculature
  • 114limb
  • 113kidney
  • 100artery
  • 75epithelium
  • 66bone element
  • 60blood
  • 60bodily fluid
  • 44musculature of body
  • 42nerve
  • 36embryo
  • 24spleen
  • 18ureter
  • 8skeleton
  • 3eye
  • 1pituitary gland
Project
  • 2777AMP
  • 6T1D
Genome assembly (visualization)
  • 2434GRCh38
  • 2424hg19
Lab
  • 2758AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 167inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 44missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

2783 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
FAIRE-seq
tissue
adipose tissue23812
islet of Langerhans3026613861
liver12214721
bone tissue58
body of pancreas3524422
cell line
HepG2359511
smooth muscle cell of the coronary artery6528
GM1287860
EndoC_BH115331
Panc1131
in vitro differentiated cells
cardiomyocytes359
adipocyte5341
neural progenitor cell20710
pancreatic endoderm184
cardiac precursors (cardiac muscle cell)191
stem cell
hESC3
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