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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
14
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
50
DNA binding
19
DNA accessibility
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
19
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
June, 2019
33
August, 2017
15
December, 2017
9
November, 2018
6
October, 2019
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2614
bam
2387
bigWig
1359
bed narrowPeak
1324
tsv
943
fastq
770
bigBed narrowPeak
298
tagAlign
161
txt
110
bed broadPeak
73
bed bed3+
73
bigBed broadPeak
64
xls
26
bed bedMethyl
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
73
Homo sapiens
Biosample type
42
tissue
25
in vitro differentiated cells
primary cell
3
cell line
3
stem cell
Organ
25
pancreas
18
connective tissue
7
liver
5
adipose tissue
4
limb
3
embryo
2
artery
2
blood vessel
2
brain
2
nerve
2
vasculature
1
musculature of body
1
spleen
Project
73
AMP
Genome assembly (visualization)
73
hg19
65
GRCh38
Lab
71
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
14
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
bigBed bedMethyl
month_released!
April, 2018
June, 2019
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
liver
3
2
white adipose tissue
4
body of pancreas
2
brain
2
+ See 6 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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