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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
168
DNase-seq
26
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
173
DNA accessibility
26
DNA binding
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
Date released
163
June, 2019
20
August, 2017
6
November, 2017
6
October, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
May, 2022
Available data
2778
bam
2551
bigWig
1517
bed narrowPeak
1330
tsv
fastq
928
bigBed narrowPeak
298
tagAlign
272
bed broadPeak
236
bed bed3+
235
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
203
Homo sapiens
Biosample type
194
tissue
primary cell
6
in vitro differentiated cells
3
cell line
Organ
68
kidney
46
musculature of body
36
limb
31
brain
27
heart
18
ureter
12
pancreas
8
connective tissue
5
blood vessel
5
vasculature
4
artery
3
eye
2
adipose tissue
2
nerve
1
liver
Project
203
AMP
Genome assembly (visualization)
187
hg19
174
GRCh38
Lab
201
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
fastq
target.investigated_as!
other post-translational modification
BIOSAMPLE
ASSAY
203 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
skeletal muscle tissue
13
1
kidney
13
muscle of leg
13
+ See 42 more…
in vitro differentiated cells
adipocyte
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
cell line
Panc1
1
1
HepG2
1
See all biosamples
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