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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
170
DNase-seq
19
ChIP-seq
4
ATAC-seq
2
Capture-C
1
pCHi-C
1
snATAC-seq
Assay category
175
DNA accessibility
19
DNA binding
Target of assay
12
transcription factor
histone
10
histone modification
7
control
5
broad histone mark
5
narrow histone mark
Date released
159
June, 2019
14
August, 2017
7
November, 2018
5
December, 2017
4
February, 2023
4
October, 2019
2
August, 2021
1
February, 2021
1
May, 2022
Available data
1781
bam
1568
bigWig
1021
tsv
821
bed narrowPeak
617
fastq
569
bigBed narrowPeak
215
bed broadPeak
215
bigBed broadPeak
197
bed bed3+
155
txt
69
tagAlign
64
xls
20
bed bedMethyl
20
bigBed bedMethyl
15
bedpe bed3+
13
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
vcf
Organism
197
Homo sapiens
Biosample type
178
tissue
primary cell
17
in vitro differentiated cells
1
cell line
1
stem cell
Organ
68
kidney
36
limb
33
musculature of body
27
brain
27
heart
19
connective tissue
18
ureter
pancreas
7
liver
6
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
1
embryo
1
spleen
Project
197
AMP
Genome assembly (visualization)
189
GRCh38
183
hg19
Lab
195
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
primary cell
month_released!
October, 2017
organ_slims!
pancreas
target.investigated_as!
histone
BIOSAMPLE
ASSAY
197 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
pCHi-C
snATAC-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
Posterior foregut
1
definitive endodermal cell
1
osteoblast
1
+ See 3 more…
cell line
HepG2
1
stem cell
hESC
1
See all biosamples
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