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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
DNase-seq
46
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
162
DNA accessibility
46
DNA binding
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
15
transcription factor
11
broad histone mark
11
narrow histone mark
9
control
2
RNA binding protein
Date released
144
June, 2019
29
August, 2017
15
December, 2017
8
November, 2018
6
October, 2019
4
February, 2023
2
August, 2021
2
September, 2017
1
February, 2021
1
May, 2022
Available data
2325
bam
2115
bigWig
1491
bed narrowPeak
931
tsv
905
bigBed narrowPeak
905
fastq
290
tagAlign
252
bed broadPeak
216
bigBed broadPeak
212
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
212
Homo sapiens
Biosample type
181
tissue
primary cell
25
in vitro differentiated cells
3
cell line
3
stem cell
Organ
68
kidney
36
limb
33
musculature of body
29
pancreas
27
brain
27
heart
19
connective tissue
ureter
7
liver
adipose tissue
5
blood vessel
5
vasculature
4
artery
3
embryo
3
eye
2
nerve
1
spleen
Project
212
AMP
Genome assembly (visualization)
204
GRCh38
196
hg19
Lab
210
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
10
missing controlled_by
Audit category:
10
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
adipose tissue
ureter
BIOSAMPLE
ASSAY
212 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans
21
heart
18
muscle of arm
17
brain
14
kidney
13
+ See 37 more…
in vitro differentiated cells
adipocyte
7
1
1
Posterior foregut
3
definitive endodermal cell
3
pancreatic endoderm
3
primitive gut cell
3
+ See 3 more…
cell line
Panc1
1
1
HepG2
1
stem cell
hESC
3
See all biosamples
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