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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 177DNase-seq
  • 50ChIP-seq
  • 4ATAC-seq
  • 2Capture-C
  • 1Hi-C
  • 1pCHi-C
  • 1snATAC-seq
Assay category
  • 182DNA accessibility
  • 50DNA binding
  • 13D chromatin structure
Target of assay
  • 22histone
  • 22histone modification
  • 19transcription factor
  • 11broad histone mark
  • 11narrow histone mark
  • 9control
  • 2RNA binding protein
Date released
  • 163June, 2019
  • 33August, 2017
  • 15December, 2017
  • 9November, 2018
  • 6October, 2019
  • 4February, 2023
  • 2August, 2021
  • 2September, 2017
  • 1February, 2021
  • 1May, 2022
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 236Homo sapiens
Biosample type
  • 205tissue
  • primary cell
  • 25in vitro differentiated cells
  • 3cell line
  • 3stem cell
Organ
  • 68kidney
  • 36limb
  • 33musculature of body
  • 29pancreas
  • 27brain
  • 27heart
  • 19connective tissue
  • 18ureter
  • 7liver
  • 6adipose tissue
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 3embryo
  • 3eye
  • 2nerve
  • 1spleen
Project
  • 236AMP
Genome assembly (visualization)
  • 228GRCh38
  • 220hg19
Lab
  • 234AMP-T2D consortium
  • 2Struan F.A. Grant, CHOP
Audit category:
  • 3inconsistent ontology term
  • 1audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 10inconsistent control read length
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

236 results

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Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
snATAC-seq
tissue
islet of Langerhans21
heart18
muscle of arm17
brain14
kidney13
in vitro differentiated cells
adipocyte711
Posterior foregut3
definitive endodermal cell3
pancreatic endoderm3
primitive gut cell3
cell line
Panc111
HepG21
stem cell
hESC3
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