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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
total RNA-seq
4
small RNA-seq
2
pCHi-C
1
ATAC-seq
Assay category
21
Transcription
1
DNA accessibility
Date released
12
February, 2020
8
July, 2019
2
March, 2020
1
February, 2023
1
October, 2019
Available data
226
bam
202
bigWig
192
bed narrowPeak
118
tagAlign
116
bigBed narrowPeak
36
bed broadPeak
27
bed bed3+
27
bigBed broadPeak
23
tsv
12
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign bed3+
Organism
24
Homo sapiens
Biosample type
24
tissue
primary cell
Organ
468
connective tissue
399
adipose tissue
309
pancreas
170
liver
164
heart
66
blood vessel
66
vasculature
62
bone element
56
artery
40
epithelium
24
brain
14
embryo
13
kidney
7
limb
7
musculature of body
5
eye
5
nerve
4
skeleton
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
24
AMP
Genome assembly (visualization)
10
hg19
9
GRCh38
Lab
24
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
biosample_type!
primary cell
files.file_type!
txt
BIOSAMPLE
ASSAY
24 results
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total RNA-seq
small RNA-seq
pCHi-C
ATAC-seq
tissue
frontal cortex
2
1
Ammon's horn
1
1
brain
1
1
cerebellum
2
cerebellum (Hemisphere)
1
1
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