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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
699
ChIP-seq
180
DNase-seq
17
WGBS
9
RRBS
5
ATAC-seq
4
FAIRE-seq
Assay category
699
DNA binding
189
DNA accessibility
26
DNA methylation
Target of assay
380
transcription factor
314
histone
314
histone modification
202
broad histone mark
112
narrow histone mark
81
recombinant protein
72
RNA binding protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
80
November, 2018
64
April, 2019
57
October, 2019
50
December, 2017
October, 2018
30
December, 2018
28
August, 2017
21
January, 2019
16
July, 2019
6
October, 2017
Available data
2709
bam
2511
bigWig
1477
bed narrowPeak
1330
tsv
891
fastq
888
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
908
Homo sapiens
Biosample type
541
tissue
356
cell line
primary cell
17
in vitro differentiated cells
Organ
358
liver
117
brain
95
heart
89
kidney
85
limb
63
blood vessel
63
vasculature
54
blood
54
bodily fluid
41
musculature of body
35
pancreas
26
nerve
25
artery
18
ureter
15
epithelium
15
spleen
10
connective tissue
7
adipose tissue
3
eye
1
pericardium
Project
914
AMP
Genome assembly (visualization)
865
GRCh38
825
hg19
Lab
914
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
29
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
month_released!
October, 2018
BIOSAMPLE
ASSAY
914 results
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ChIP-seq
DNase-seq
WGBS
RRBS
ATAC-seq
FAIRE-seq
tissue
liver
38
2
1
heart left ventricle
28
3
2
1
kidney
18
13
1
1
heart
7
18
1
tibial nerve
24
2
+ See 54 more…
cell line
HepG2
293
1
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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