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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
Hi-C
15
WGBS
6
RRBS
Assay category
21
DNA methylation
17
3D chromatin structure
Date released
14
July, 2019
9
March, 2020
7
November, 2018
August, 2017
3
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
Available data
2444
bam
2237
bigWig
1320
bed narrowPeak
1241
tsv
817
bigBed narrowPeak
720
fastq
246
bed broadPeak
235
bigBed broadPeak
225
tagAlign
203
bed bed3+
161
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
38
Homo sapiens
Biosample type
31
tissue
primary cell
4
in vitro differentiated cells
3
cell line
Organ
10
heart
10
pancreas
3
liver
3
musculature of body
2
blood vessel
2
kidney
2
spleen
2
vasculature
1
brain
1
epithelium
1
limb
1
pericardium
Project
38
AMP
Genome assembly (visualization)
23
hg19
15
GRCh38
Lab
35
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
month_released!
August, 2017
May, 2019
BIOSAMPLE
ASSAY
38 results
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Hi-C
WGBS
RRBS
tissue
heart left ventricle
1
2
1
pancreas
1
2
1
heart right ventricle
1
2
islet of Langerhans
2
1
aorta
1
1
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in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
1
EndoC_BH1
1
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