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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
DNase-seq
92
ChIP-seq
15
Hi-C
2
ATAC-seq
2
pCHi-C
Assay category
173
DNA accessibility
92
DNA binding
15
3D chromatin structure
Target of assay
48
histone
48
histone modification
44
transcription factor
28
broad histone mark
20
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
159
June, 2019
64
November, 2017
26
August, 2017
10
March, 2020
8
November, 2018
6
October, 2019
4
October, 2017
2
August, 2021
2
November, 2019
1
March, 2019
Available data
2190
bam
2007
bigWig
1397
bed narrowPeak
905
fastq
865
tsv
861
bigBed narrowPeak
284
tagAlign
265
bed broadPeak
229
bigBed broadPeak
225
bed bed3+
161
txt
64
xls
23
bed bedMethyl
23
bigBed bedMethyl
17
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
276
Homo sapiens
Biosample type
214
tissue
61
cell line
primary cell
7
in vitro differentiated cells
Organ
68
kidney
63
liver
47
musculature of body
36
brain
36
limb
30
heart
25
pancreas
18
ureter
6
blood vessel
vasculature
5
connective tissue
adipose tissue
4
artery
3
eye
2
nerve
1
epithelium
1
spleen
Project
282
AMP
Genome assembly (visualization)
264
hg19
230
GRCh38
Lab
278
AMP-T2D consortium
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
8
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
adipose tissue
vasculature
BIOSAMPLE
ASSAY
282 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
ATAC-seq
pCHi-C
tissue
heart
18
1
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 41 more…
cell line
HepG2
58
1
EndoC_BH1
1
Panc1
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
1
lymphocyte of B lineage (iPSC)
1
1
adipocyte
1
cardiac precursors (cardiac muscle cell)
1
See all biosamples
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