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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
DNase-seq
93
ChIP-seq
17
WGBS
8
RRBS
2
ATAC-seq
Assay category
112
DNA accessibility
93
DNA binding
25
DNA methylation
Target of assay
49
histone
49
histone modification
44
transcription factor
28
broad histone mark
21
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
95
June, 2019
64
November, 2017
32
August, 2017
16
November, 2018
13
July, 2019
5
October, 2019
4
October, 2017
1
March, 2019
Available data
2670
bam
2453
bigWig
1361
bed narrowPeak
1311
tsv
949
fastq
845
bigBed narrowPeak
298
tagAlign
205
bed broadPeak
168
bed bed3+
168
bigBed broadPeak
99
txt
25
bed bedMethyl
25
bigBed bedMethyl
19
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
3
tar
2
ibed
1
bedpe
1
csv
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
224
Homo sapiens
Biosample type
169
tissue
60
cell line
primary cell
1
in vitro differentiated cells
Organ
kidney
63
liver
48
musculature of body
37
brain
37
limb
34
heart
27
pancreas
18
ureter
6
blood vessel
6
connective tissue
6
vasculature
5
adipose tissue
4
artery
3
eye
3
spleen
2
nerve
1
pericardium
Project
230
AMP
Genome assembly (visualization)
197
hg19
186
GRCh38
Lab
228
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
esophagus
kidney
BIOSAMPLE
ASSAY
230 results
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DNase-seq
ChIP-seq
WGBS
RRBS
ATAC-seq
tissue
heart
18
1
brain
14
3
1
muscle of arm
17
skeletal muscle tissue
13
2
muscle of leg
13
1
+ See 40 more…
cell line
HepG2
58
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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