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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
96
ChIP-seq
2
ATAC-seq
Assay category
175
DNA accessibility
96
DNA binding
Target of assay
49
histone
49
histone modification
47
transcription factor
28
broad histone mark
21
narrow histone mark
5
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
160
June, 2019
67
November, 2017
27
August, 2017
9
November, 2018
4
October, 2017
3
October, 2019
1
March, 2019
Available data
2630
bam
2430
bigWig
1410
bed narrowPeak
1264
tsv
949
fastq
871
bigBed narrowPeak
292
tagAlign
268
bed broadPeak
231
bed bed3+
231
bigBed broadPeak
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
265
Homo sapiens
Biosample type
208
tissue
62
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
64
liver
45
musculature of body
36
brain
36
limb
27
heart
21
pancreas
18
ureter
5
blood vessel
vasculature
4
artery
4
connective tissue
3
adipose tissue
3
eye
2
nerve
1
spleen
Project
271
AMP
Genome assembly (visualization)
254
hg19
232
GRCh38
Lab
269
AMP-T2D consortium
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
vasculature
BIOSAMPLE
ASSAY
271 results
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DNase-seq
ChIP-seq
ATAC-seq
tissue
heart
18
brain
14
3
muscle of arm
17
kidney
13
muscle of leg
13
+ See 42 more…
cell line
HepG2
61
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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