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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1099ChIP-seq
  • 239ATAC-seq
  • 180DNase-seq
  • 4FAIRE-seq
Assay category
  • 1099DNA binding
  • 423DNA accessibility
Target of assay
  • 635histone modification
  • 634histone
  • 459transcription factor
  • 325narrow histone mark
  • 308broad histone mark
  • 95RNA binding protein
  • 88recombinant protein
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 307November, 2017
  • 168October, 2019
  • 163June, 2019
  • 109August, 2017
  • 103August, 2021
  • 93May, 2019
  • 73November, 2018
  • 72December, 2017
  • 65April, 2019
  • 65February, 2023
  • 45October, 2018
  • 40May, 2024
  • 38May, 2022
  • 37November, 2019
  • 30December, 2018
  • 27May, 2020
  • 22February, 2021
  • 21January, 2019
  • 16February, 2018
  • 12October, 2017
  • 7July, 2019
  • 6May, 2021
  • 3March, 2020
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1516Homo sapiens
Biosample type
  • 984tissue
  • 404cell line
  • primary cell
  • 132in vitro differentiated cells
  • 2stem cell
Organ
  • 435liver
  • 192brain
  • 185heart
  • 161kidney
  • 146pancreas
  • 112blood vessel
  • 112vasculature
  • 92limb
  • 74artery
  • 58connective tissue
  • 54blood
  • 54bodily fluid
  • 51musculature of body
  • 45epithelium
  • 30eye
  • 27nerve
  • 18ureter
  • 14embryo
  • 14spleen
  • 13adipose tissue
  • 8bone element
  • 8skeleton
  • 1pituitary gland
Project
  • 1518AMP
  • 4T1D
Genome assembly (visualization)
  • 1371GRCh38
  • 1310hg19
Lab
  • 1362AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 18Kyle Gaulton, UCSD
  • 14Bing Ren, UCSD
  • 4Struan F.A. Grant, CHOP
Audit category:
  • 38inconsistent ontology term
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 16missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

1522 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
liver82202
kidney2064131
islet of Langerhans203711
coronary artery3362
left cardiac atrium401
cell line
HepG23071
GM1287854
EndoC_BH1131
smooth muscle cell of the coronary artery48
Panc161
in vitro differentiated cells
adipocyte4211
neural progenitor cell1310
hepatocyte14
pancreatic endoderm12
definitive endodermal cell6
stem cell
hESC2
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