Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
total RNA-seq
6
single cell RNA-seq
2
ATAC-seq
2
small RNA-seq
1
Hi-C
1
pCHi-C
Assay category
306
Transcription
2
DNA accessibility
1
3D chromatin structure
Date released
116
July, 2018
89
August, 2017
40
May, 2021
26
February, 2021
20
November, 2019
6
April, 2018
6
March, 2020
4
July, 2019
1
August, 2021
1
February, 2020
1
March, 2019
Available data
493
bam
430
bigWig
309
tsv
213
fastq
145
bed narrowPeak
68
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
7
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
310
Homo sapiens
Biosample type
276
tissue
primary cell
34
cell line
Organ
463
connective tissue
399
adipose tissue
310
pancreas
169
liver
164
heart
66
blood vessel
66
vasculature
58
bone element
56
artery
40
epithelium
23
brain
18
kidney
14
embryo
7
limb
7
musculature of body
5
eye
5
nerve
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
thymus
1
urinary bladder
Project
308
AMP
2
T1D
Genome assembly (visualization)
307
hg19
304
GRCh38
Lab
308
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
34
inconsistent ontology term
biosample_type!
primary cell
month_released!
May, 2019
BIOSAMPLE
ASSAY
310 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
ATAC-seq
small RNA-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
261
6
1
1
body of pancreas
3
2
pancreas
1
1
cell line
EndoC_BH1
33
1
Download