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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
176
DNase-seq
58
ChIP-seq
15
WGBS
9
RRBS
Assay category
176
DNA accessibility
58
DNA binding
24
DNA methylation
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
58
November, 2017
15
November, 2018
14
July, 2019
5
October, 2019
4
August, 2017
Available data
2343
bam
2133
bigWig
1509
bed narrowPeak
931
tsv
923
bigBed narrowPeak
905
fastq
290
tagAlign
270
bed broadPeak
234
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
258
Homo sapiens
Biosample type
197
tissue
60
cell line
primary cell
1
in vitro differentiated cells
Organ
69
kidney
63
liver
37
limb
35
musculature of body
34
heart
28
brain
18
ureter
13
pancreas
6
blood vessel
6
vasculature
5
connective tissue
adipose tissue
4
artery
3
eye
3
spleen
2
nerve
1
pericardium
Project
258
AMP
Genome assembly (visualization)
235
GRCh38
227
hg19
Lab
258
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
258 results
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DNase-seq
ChIP-seq
WGBS
RRBS
tissue
heart
18
1
muscle of arm
17
brain
14
1
kidney
13
1
muscle of leg
13
1
+ See 43 more…
cell line
HepG2
58
1
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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