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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
1
DNase-seq
Assay category
58
DNA binding
1
DNA accessibility
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
1
August, 2017
Available data
2783
bam
2556
bigWig
1522
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
59
Homo sapiens
Biosample type
58
cell line
primary cell
1
in vitro differentiated cells
Organ
58
liver
1
connective tissue
Project
59
AMP
Genome assembly (visualization)
59
hg19
45
GRCh38
Lab
59
AMP-T2D consortium
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bed bed3+
csv
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
in vitro differentiated cells
adipocyte
1
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