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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
179
DNase-seq
117
total RNA-seq
29
ATAC-seq
11
WGBS
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
763
DNA binding
210
DNA accessibility
123
Transcription
14
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
229
August, 2017
163
June, 2019
94
December, 2017
87
November, 2018
58
October, 2018
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
5
October, 2019
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2783
bam
2556
bigWig
1458
bed narrowPeak
1330
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
104
txt
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
1110
Homo sapiens
Biosample type
544
tissue
primary cell
428
cell line
141
in vitro differentiated cells
4
stem cell
Organ
465
liver
218
pancreas
99
connective tissue
68
kidney
60
blood
60
bodily fluid
45
adipose tissue
37
brain
36
limb
34
musculature of body
27
embryo
27
heart
24
spleen
19
epithelium
18
ureter
5
blood vessel
5
vasculature
4
artery
3
eye
2
nerve
Project
1117
AMP
Genome assembly (visualization)
934
hg19
890
GRCh38
5
hg18
Lab
1091
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
5
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
1117 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
tissue
islet of Langerhans
28
1
97
20
6
1
liver
67
2
1
1
body of pancreas
33
4
4
2
spleen
20
1
1
2
brain
9
14
+ See 44 more…
cell line
HepG2
360
5
1
1
GM12878
60
Panc1
1
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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