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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
175
DNase-seq
58
ChIP-seq
Assay category
175
DNA accessibility
58
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
8
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
162
June, 2019
58
November, 2017
8
November, 2018
5
October, 2019
August, 2017
Available data
2136
bam
1924
bigWig
1403
bed narrowPeak
902
bigBed narrowPeak
842
tsv
694
fastq
244
bed broadPeak
233
bigBed broadPeak
225
tagAlign
201
bed bed3+
161
txt
64
xls
21
bed bedMethyl
21
bigBed bedMethyl
18
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
233
Homo sapiens
Biosample type
174
tissue
59
cell line
primary cell
Organ
68
kidney
61
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
5
vasculature
4
artery
3
eye
adipose tissue
2
connective tissue
2
nerve
1
spleen
Project
233
AMP
Genome assembly (visualization)
219
GRCh38
217
hg19
Lab
233
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
13
inconsistent control read length
biosample_type!
primary cell
month_released!
August, 2017
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
233 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
cell line
HepG2
58
Panc1
1
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