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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
173
DNase-seq
50
ChIP-seq
Assay category
173
DNA accessibility
50
DNA binding
Target of assay
44
transcription factor
14
histone
14
histone modification
broad histone mark
6
narrow histone mark
4
RNA binding protein
4
chromatin remodeller
1
other context
1
other post-translational modification
Date released
160
June, 2019
50
November, 2017
9
November, 2018
3
October, 2019
1
August, 2017
Available data
2388
bam
2157
bigWig
1264
tsv
1138
bed narrowPeak
864
fastq
686
bigBed narrowPeak
240
bed broadPeak
223
bigBed broadPeak
220
bed bed3+
196
tagAlign
161
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
223
Homo sapiens
Biosample type
171
tissue
51
cell line
primary cell
1
in vitro differentiated cells
Organ
68
kidney
53
liver
36
limb
32
musculature of body
27
brain
27
heart
18
ureter
7
pancreas
5
blood vessel
vasculature
4
artery
3
connective tissue
3
eye
2
adipose tissue
2
nerve
1
spleen
Project
223
AMP
Genome assembly (visualization)
210
GRCh38
207
hg19
Lab
223
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
7
inconsistent control read length
biosample_type!
primary cell
organ_slims!
vasculature
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
223 results
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DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 36 more…
cell line
HepG2
50
Panc1
1
in vitro differentiated cells
adipocyte
1
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