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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178DNase-seq
  • 58ChIP-seq
Assay category
  • 178DNA accessibility
  • 58DNA binding
Target of assay
  • 44transcription factor
  • 14histone
  • 14histone modification
  • 8broad histone mark
  • 6narrow histone mark
  • 4RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 163June, 2019
  • 58November, 2017
  • 9November, 2018
  • 5October, 2019
  • 1August, 2017
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 236Homo sapiens
Biosample type
  • 176tissue
  • 59cell line
  • primary cell
  • 1in vitro differentiated cells
Organ
  • 68kidney
  • 61liver
  • 36limb
  • 32musculature of body
  • 27brain
  • 27heart
  • 18ureter
  • 7pancreas
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 3connective tissue
  • 3eye
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 236AMP
Genome assembly (visualization)
  • 222GRCh38
  • 220hg19
Lab
  • 236AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 13inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

236 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
cell line
HepG258
Panc11
in vitro differentiated cells
adipocyte1
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