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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 178DNase-seq
  • 58ChIP-seq
Assay category
  • 178DNA accessibility
  • 58DNA binding
Target of assay
  • 44transcription factor
  • 14histone
  • 14histone modification
  • 8broad histone mark
  • 6narrow histone mark
  • 4RNA binding protein
  • 4chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 163June, 2019
  • 58November, 2017
  • 9November, 2018
  • 5October, 2019
  • 1August, 2017
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1331tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 237bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 236Homo sapiens
Biosample type
  • 176tissue
  • 59cell line
  • primary cell
  • 1in vitro differentiated cells
Organ
  • 68kidney
  • 61liver
  • 36limb
  • 32musculature of body
  • 27brain
  • 27heart
  • 18ureter
  • 7pancreas
  • 5blood vessel
  • 5vasculature
  • 4artery
  • 3connective tissue
  • 3eye
  • 2adipose tissue
  • 2nerve
  • 1spleen
Project
  • 236AMP
Genome assembly (visualization)
  • 222GRCh38
  • 220hg19
Lab
  • 236AMP-T2D consortium
Audit category:
  • 1inconsistent ontology term
Audit category:
  • 13inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

236 results

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Clear Filters
DNase-seq
ChIP-seq
tissue
heart18
muscle of arm17
brain14
kidney13
muscle of leg13
renal cortex interstitium11
renal pelvis10
right kidney10
left kidney9
body of pancreas4
left renal cortex interstitium4
left renal pelvis4
right renal pelvis4
heart left ventricle3
retina3
right renal cortex interstitium3
coronary artery2
frontal cortex2
liver2
omental fat pad2
pancreas2
right atrium auricular region2
tibial artery2
tibial nerve2
Ammon's horn1
ascending aorta1
caudate nucleus1
cerebellar cortex1
cerebellum (Hemisphere)1
forelimb muscle1
globus pallidus1
heart right ventricle1
hindlimb muscle1
inferior parietal cortex1
left cardiac atrium1
medulla oblongata1
midbrain1
middle frontal gyrus1
occipital lobe1
pons1
putamen1
right lobe of liver1
spleen1
superior temporal gyrus1
cell line
HepG258
Panc11
in vitro differentiated cells
adipocyte1
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