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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
621
ChIP-seq
5
ATAC-seq
4
FAIRE-seq
3
DNase-seq
Assay category
621
DNA binding
12
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
221
broad histone mark
narrow histone mark
83
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
281
November, 2017
64
November, 2018
60
May, 2019
43
December, 2017
42
April, 2019
37
October, 2019
34
October, 2018
30
December, 2018
18
January, 2019
17
August, 2017
5
October, 2017
2
July, 2019
Available data
2481
bam
2228
bigWig
1330
tsv
1197
bed narrowPeak
879
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
629
Homo sapiens
Biosample type
344
cell line
277
tissue
primary cell
12
in vitro differentiated cells
Organ
339
liver
59
brain
53
blood
53
bodily fluid
43
pancreas
41
heart
39
blood vessel
39
vasculature
34
limb
16
nerve
15
artery
12
kidney
10
connective tissue
10
epithelium
10
spleen
7
adipose tissue
4
musculature of body
Project
633
AMP
Genome assembly (visualization)
594
GRCh38
593
hg19
Lab
633
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
23
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
bed bed3+
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
633 results
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Clear Filters
ChIP-seq
ATAC-seq
FAIRE-seq
DNase-seq
cell line
HepG2
287
GM12878
53
Panc1
3
glomerular visceral epithelial cell
1
tissue
liver
37
body of pancreas
20
heart left ventricle
20
tibial nerve
16
tibial artery
14
+ See 28 more…
in vitro differentiated cells
hepatocyte
9
adipocyte
2
1
See all biosamples
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