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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
440
ChIP-seq
180
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
440
DNA binding
189
DNA accessibility
Target of assay
395
transcription factor
344
histone
344
histone modification
broad histone mark
123
narrow histone mark
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
229
November, 2017
163
June, 2019
52
November, 2018
36
December, 2017
33
May, 2019
28
December, 2018
24
April, 2019
24
October, 2019
15
October, 2018
11
August, 2017
11
January, 2019
2
July, 2019
1
October, 2017
Available data
2412
bam
2151
bigWig
1330
tsv
1119
bed narrowPeak
780
fastq
629
bigBed narrowPeak
241
bed broadPeak
224
bigBed broadPeak
223
bed bed3+
202
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
bed bedgraph
6
csv
2
ibed
2
tar
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
627
Homo sapiens
Biosample type
337
tissue
284
cell line
primary cell
8
in vitro differentiated cells
Organ
280
liver
78
kidney
58
brain
50
limb
49
heart
44
blood
44
bodily fluid
34
musculature of body
33
pancreas
23
blood vessel
23
vasculature
18
ureter
10
artery
10
nerve
9
spleen
8
connective tissue
6
epithelium
5
adipose tissue
3
eye
Project
629
AMP
Genome assembly (visualization)
594
hg19
593
GRCh38
Lab
629
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
11
missing controlled_by
Audit category:
16
inconsistent control read length
5
inconsistent control run_type
biosample_type!
primary cell
files.file_type!
bed bedgraph
target.investigated_as!
RNA binding protein
broad histone mark
BIOSAMPLE
ASSAY
629 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
33
2
kidney
8
13
1
heart
2
18
muscle of arm
17
brain
1
14
+ See 53 more…
cell line
HepG2
235
GM12878
44
Panc1
3
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
hepatocyte
5
adipocyte
1
2
See all biosamples
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