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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
685
ChIP-seq
179
DNase-seq
5
ATAC-seq
4
FAIRE-seq
Assay category
685
DNA binding
188
DNA accessibility
Target of assay
378
transcription factor
302
histone
302
histone modification
195
broad histone mark
107
narrow histone mark
81
recombinant protein
70
RNA binding protein
32
chromatin remodeller
5
other context
5
other post-translational modification
Date released
306
November, 2017
163
June, 2019
93
May, 2019
73
November, 2018
64
April, 2019
56
October, 2019
October, 2018
36
December, 2017
30
December, 2018
23
August, 2017
21
January, 2019
6
October, 2017
2
July, 2019
Available data
2634
bam
2441
bigWig
1432
bed narrowPeak
tsv
873
bigBed narrowPeak
872
fastq
295
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
18
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
867
Homo sapiens
Biosample type
516
tissue
354
cell line
primary cell
3
in vitro differentiated cells
Organ
356
liver
116
brain
88
heart
88
kidney
84
limb
62
blood vessel
62
vasculature
54
blood
54
bodily fluid
38
musculature of body
29
pancreas
26
nerve
25
artery
18
ureter
epithelium
13
spleen
8
connective tissue
5
adipose tissue
3
eye
Project
873
AMP
Genome assembly (visualization)
833
GRCh38
801
hg19
Lab
873
AMP-T2D consortium
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
29
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
tsv
month_released!
October, 2018
organ_slims!
epithelium
BIOSAMPLE
ASSAY
873 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver
38
2
kidney
18
13
1
heart left ventricle
28
3
tibial nerve
24
2
heart
7
18
+ See 52 more…
cell line
HepG2
293
GM12878
54
Panc1
6
1
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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