Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 744ChIP-seq
  • 180DNase-seq
  • 5ATAC-seq
  • 4FAIRE-seq
Assay category
  • 744DNA binding
  • 189DNA accessibility
Target of assay
  • 395transcription factor
  • 344histone
  • 344histone modification
  • 221broad histone mark
  • 123narrow histone mark
  • 83RNA binding protein
  • 81recombinant protein
  • 33chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 306November, 2017
  • 163June, 2019
  • 93May, 2019
  • 73November, 2018
  • 64April, 2019
  • 57October, 2019
  • 50December, 2017
  • 45October, 2018
  • 30December, 2018
  • 23August, 2017
  • 21January, 2019
  • 6October, 2017
  • 2July, 2019
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 927Homo sapiens
Biosample type
  • 561tissue
  • 355cell line
  • primary cell
  • 17in vitro differentiated cells
Organ
  • 356liver
  • 116brain
  • 88heart
  • 88kidney
  • 84limb
  • 69pancreas
  • 62blood vessel
  • 62vasculature
  • 54blood
  • 54bodily fluid
  • 38musculature of body
  • 26nerve
  • 25artery
  • 18ureter
  • 15epithelium
  • 13connective tissue
  • 13spleen
  • 10adipose tissue
  • 3eye
Project
  • 933AMP
Genome assembly (visualization)
  • 893GRCh38
  • 861hg19
Lab
  • 933AMP-T2D consortium
Audit category:
  • 28inconsistent control
  • 1inconsistent ontology term
Audit category:
  • 15missing controlled_by
Audit category:
  • 30inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

933 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
tissue
liver382
kidney18131
heart left ventricle283
body of pancreas264
tibial nerve242
cell line
HepG2293
GM1287854
Panc161
glomerular visceral epithelial cell1
in vitro differentiated cells
hepatocyte14
adipocyte12
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego