Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
394
total RNA-seq
19
ChIP-seq
4
ATAC-seq
2
DNase-seq
2
WGBS
2
small RNA-seq
Assay category
396
Transcription
19
DNA binding
6
DNA accessibility
2
DNA methylation
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
17
August, 2017
10
July, 2019
5
October, 2018
1
January, 2018
1
June, 2019
1
November, 2018
1
October, 2017
1
October, 2019
Available data
440
bam
423
bigWig
399
tsv
44
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
423
Homo sapiens
Biosample type
423
tissue
primary cell
Organ
611
liver
538
connective tissue
431
pancreas
423
adipose tissue
214
heart
202
brain
126
blood vessel
126
vasculature
103
kidney
91
limb
83
artery
70
epithelium
58
bone element
57
musculature of body
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
3
eye
1
pituitary gland
Project
423
AMP
Genome assembly (visualization)
421
hg19
420
GRCh38
Lab
423
AMP-T2D consortium
Audit category:
12
missing controlled_by
biosample_type!
primary cell
files.file_type!
bed bed3
BIOSAMPLE
ASSAY
423 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
small RNA-seq
tissue
adipose tissue
381
1
2
2
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
visceral abdominal adipose tissue
3
+ See 1 more…
See all biosamples
Download