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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
151
ChIP-seq
94
total RNA-seq
2
ATAC-seq
2
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
151
DNA binding
94
Transcription
5
DNA accessibility
2
DNA methylation
Target of assay
92
histone modification
91
histone
59
transcription factor
49
broad histone mark
41
narrow histone mark
12
RNA binding protein
8
chromatin remodeller
Date released
549
February, 2021
325
November, 2017
226
August, 2017
184
October, 2019
170
May, 2020
163
June, 2019
132
May, 2021
116
July, 2018
93
May, 2019
80
November, 2018
72
December, 2017
65
April, 2019
63
July, 2019
45
October, 2018
44
August, 2021
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
May, 2022
14
October, 2017
8
January, 2018
6
April, 2018
3
February, 2023
Available data
259
fastq
254
bam
252
bigWig
130
bed narrowPeak
94
tsv
73
tagAlign
44
bigBed narrowPeak
33
bed bed3+
27
bed broadPeak
5
bed bedMethyl
5
bigBed bedMethyl
1
bigBed broadPeak
Organism
246
Homo sapiens
Biosample type
184
tissue
48
in vitro differentiated cells
primary cell
20
cell line
Organ
130
pancreas
65
connective tissue
23
liver
17
adipose tissue
15
blood
15
bodily fluid
13
musculature of body
6
spleen
Project
252
AMP
Genome assembly (visualization)
250
hg19
231
GRCh38
Lab
252
AMP-T2D consortium
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
May, 2022
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
27
89
1
1
liver
17
skeletal muscle tissue
13
pancreas
12
white adipose tissue
12
+ See 5 more…
in vitro differentiated cells
adipocyte
47
1
cell line
GM12878
15
HepG2
5
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