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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
DNase-seq
130
ChIP-seq
89
total RNA-seq
2
ATAC-seq
2
WGBS
1
FAIRE-seq
Assay category
168
DNA accessibility
130
DNA binding
89
Transcription
2
DNA methylation
Target of assay
85
histone modification
84
histone
45
broad histone mark
45
transcription factor
38
narrow histone mark
6
RNA binding protein
2
chromatin remodeller
Date released
549
February, 2021
325
November, 2017
226
August, 2017
184
October, 2019
170
May, 2020
163
June, 2019
132
May, 2021
116
July, 2018
93
May, 2019
80
November, 2018
72
December, 2017
65
April, 2019
63
July, 2019
45
October, 2018
44
August, 2021
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
6
April, 2018
3
February, 2023
Available data
389
bigWig
387
bam
272
bed narrowPeak
229
fastq
196
bed bed3+
190
bed broadPeak
186
bigBed narrowPeak
164
bigBed broadPeak
89
tsv
73
tagAlign
5
bed bedMethyl
5
bigBed bedMethyl
Organism
383
Homo sapiens
Biosample type
341
tissue
primary cell
48
in vitro differentiated cells
Organ
134
pancreas
68
kidney
66
connective tissue
45
musculature of body
32
limb
27
heart
25
brain
18
adipose tissue
18
liver
18
ureter
3
blood vessel
3
eye
3
vasculature
2
artery
Project
389
AMP
Genome assembly (visualization)
371
hg19
368
GRCh38
Lab
389
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
27
missing controlled_by
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
BIOSAMPLE
ASSAY
389 results
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DNase-seq
ChIP-seq
total RNA-seq
ATAC-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
1
27
89
1
heart
18
liver
17
muscle of arm
17
pancreas
2
12
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in vitro differentiated cells
adipocyte
1
47
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