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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
65
total RNA-seq
27
DNase-seq
6
WGBS
5
ATAC-seq
1
small RNA-seq
Assay category
165
DNA binding
66
Transcription
32
DNA accessibility
6
DNA methylation
Target of assay
96
histone
96
histone modification
67
transcription factor
57
broad histone mark
39
narrow histone mark
20
RNA binding protein
10
chromatin remodeller
Date released
56
February, 2021
47
April, 2019
40
May, 2024
27
December, 2018
27
June, 2019
17
July, 2019
15
January, 2019
15
May, 2019
12
November, 2018
7
October, 2019
3
May, 2021
2
March, 2020
1
January, 2018
Available data
269
bigWig
259
bam
239
bed narrowPeak
165
tsv
142
bigBed narrowPeak
60
fastq
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
269
Homo sapiens
Biosample type
157
tissue
111
cell line
primary cell
1
in vitro differentiated cells
Organ
611
liver
538
connective tissue
431
pancreas
423
adipose tissue
214
heart
202
brain
126
blood vessel
126
vasculature
103
kidney
91
limb
83
artery
70
epithelium
58
bone element
57
musculature of body
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
3
eye
1
pituitary gland
0
ovary
Project
269
AMP
Genome assembly (visualization)
267
GRCh38
221
hg19
Lab
229
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
1
inconsistent control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
269 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
small RNA-seq
tissue
left cardiac atrium
40
1
heart left ventricle
29
3
3
2
2
heart
12
4
18
1
1
heart right ventricle
11
1
1
2
right atrium auricular region
7
2
2
1
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
4
52
GM12878
54
1
in vitro differentiated cells
cardiac fibroblast
1
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