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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1143ChIP-seq
  • 1126total RNA-seq
  • 180DNase-seq
  • 58ATAC-seq
  • 17WGBS
  • 16small RNA-seq
  • 6single cell RNA-seq
  • 5GRO-seq
  • 4FAIRE-seq
  • 1Hi-C
Assay category
  • 1148Transcription
  • 1143DNA binding
  • 242DNA accessibility
  • 17DNA methylation
  • 13D chromatin structure
Target of assay
  • 639histone modification
  • 638histone
  • 486transcription factor
  • 328narrow histone mark
  • 309broad histone mark
  • 96RNA binding protein
  • 88recombinant protein
  • 35chromatin remodeller
  • 13control
  • 5other context
  • 5other post-translational modification
Date released
  • 549February, 2021
  • 325November, 2017
  • 226August, 2017
  • 184October, 2019
  • 170May, 2020
  • 163June, 2019
  • 132May, 2021
  • 116July, 2018
  • 93May, 2019
  • 80November, 2018
  • 72December, 2017
  • 65April, 2019
  • 63July, 2019
  • 45October, 2018
  • 44August, 2021
  • 40May, 2024
  • 31February, 2018
  • 31November, 2019
  • 30December, 2018
  • 26January, 2019
  • 20March, 2020
  • 20May, 2022
  • 14October, 2017
  • 8January, 2018
  • 6April, 2018
  • 3February, 2023
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2550Homo sapiens
Biosample type
  • 1772tissue
  • primary cell
  • 522cell line
  • 259in vitro differentiated cells
  • 3stem cell
Organ
  • 611liver
  • 538connective tissue
  • 431pancreas
  • 423adipose tissue
  • 214heart
  • 202brain
  • 126blood vessel
  • 126vasculature
  • 103kidney
  • 91limb
  • 83artery
  • 70epithelium
  • 58bone element
  • 57musculature of body
  • 55blood
  • 55bodily fluid
  • 31nerve
  • 29embryo
  • 18ureter
  • 16spleen
  • 3eye
  • 1pituitary gland
Project
  • 2550AMP
  • 6T1D
Genome assembly (visualization)
  • 2420hg19
  • 2411GRCh38
  • 5hg18
Lab
  • 2471AMP-T2D consortium
  • 40Patrick T. Ellinor, Broad
  • 20Karen Mohlke, UNC
  • 14Bing Ren, UCSD
  • 5Kyle Gaulton, UCSD
  • 5Struan F.A. Grant, CHOP
  • 1Stephen Parker, UMich
Audit category:
  • 154inconsistent ontology term
  • 28inconsistent control
Audit category:
  • 42missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 8inconsistent control run_type
  • 2inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

2556 results

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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
small RNA-seq
single cell RNA-seq
GRO-seq
FAIRE-seq
Hi-C
tissue
adipose tissue138122
islet of Langerhans292601361
liver821472201
bone tissue58
left cardiac atrium401
cell line
HepG232651
smooth muscle cell of the coronary artery452
GM12878541
EndoC_BH113332
H1-hESC8
in vitro differentiated cells
cardiomyocytes359
adipocyte47413
neural progenitor cell137
cardiac precursors (cardiac muscle cell)19
pancreatic endoderm1241
stem cell
hESC21
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