Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
171
ChIP-seq
6
single cell RNA-seq
Assay category
171
DNA binding
6
Transcription
Target of assay
223
histone
223
histone modification
narrow histone mark
96
broad histone mark
66
control
9
transcription factor
Date released
52
November, 2017
49
August, 2017
23
May, 2020
14
February, 2021
13
August, 2021
12
October, 2017
9
October, 2019
5
May, 2021
Available data
2426
bam
2201
bigWig
1310
tsv
1164
bed narrowPeak
879
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
225
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
172
Homo sapiens
Biosample type
134
tissue
primary cell
28
in vitro differentiated cells
15
cell line
Organ
64
brain
45
liver
15
connective tissue
12
pancreas
10
musculature of body
6
artery
6
blood vessel
6
heart
6
vasculature
5
adipose tissue
5
kidney
2
epithelium
Project
177
AMP
Genome assembly (visualization)
60
GRCh38
44
hg19
Lab
177
AMP-T2D consortium
Audit category:
5
audit script error
3
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
month_released!
November, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
177 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
tissue
liver
37
1
brain
12
caudate nucleus
10
layer of hippocampus
10
skeletal muscle tissue
10
+ See 16 more…
in vitro differentiated cells
neural progenitor cell
13
adipocyte
10
cardiomyocytes
3
pancreatic PP cell
2
cell line
HepG2
7
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
Download