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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
160
ChIP-seq
117
total RNA-seq
8
WGBS
6
single cell RNA-seq
5
GRO-seq
3
ATAC-seq
3
RRBS
1
Hi-C
Assay category
160
DNA binding
123
Transcription
11
DNA methylation
3
DNA accessibility
1
3D chromatin structure
Target of assay
133
control
20
transcription factor
7
histone
7
histone modification
4
narrow histone mark
3
RNA binding protein
3
broad histone mark
1
recombinant protein
Date released
124
August, 2017
66
November, 2017
23
February, 2018
22
December, 2017
14
November, 2018
9
January, 2019
9
October, 2018
6
April, 2018
6
May, 2022
6
September, 2017
5
December, 2018
5
January, 2018
5
October, 2017
2
July, 2018
1
March, 2019
Available data
2343
bam
2119
bigWig
bed narrowPeak
923
bigBed narrowPeak
921
tsv
905
fastq
290
tagAlign
270
bed broadPeak
234
bigBed broadPeak
230
bed bed3+
161
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
hdf5
1
tagAlign bed3+
Organism
302
Homo sapiens
Biosample type
primary cell
174
tissue
80
cell line
47
in vitro differentiated cells
2
stem cell
Organ
136
pancreas
97
liver
46
connective tissue
adipose tissue
13
embryo
10
spleen
6
blood
6
bodily fluid
4
brain
3
epithelium
2
musculature of body
Project
303
AMP
Genome assembly (visualization)
163
hg19
149
GRCh38
5
hg18
Lab
295
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
Audit category:
17
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bed narrowPeak
lab.title!
Bing Ren, UCSD
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
303 results
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ChIP-seq
total RNA-seq
WGBS
single cell RNA-seq
GRO-seq
ATAC-seq
RRBS
Hi-C
tissue
islet of Langerhans
16
97
6
2
liver
17
1
1
body of pancreas
8
2
spleen
8
2
pancreas
3
2
+ See 4 more…
cell line
HepG2
67
5
1
1
GM12878
6
in vitro differentiated cells
adipocyte
11
pancreatic endoderm
6
4
1
definitive endodermal cell
2
2
1
primitive gut cell
2
2
1
embryonic stem cell
1
2
+ See 6 more…
stem cell
hESC
1
1
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