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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
763
ChIP-seq
117
total RNA-seq
29
ATAC-seq
11
DNase-seq
6
single cell RNA-seq
5
GRO-seq
2
FAIRE-seq
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
763
DNA binding
123
Transcription
42
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
224
August, 2017
94
December, 2017
80
November, 2018
58
October, 2018
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
1
August, 2018
1
March, 2019
Available data
2780
bam
2553
bigWig
1492
bed narrowPeak
1325
tsv
949
fastq
930
bigBed narrowPeak
298
tagAlign
270
bed broadPeak
233
bed bed3+
233
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
930
Homo sapiens
Biosample type
426
cell line
primary cell
366
tissue
141
in vitro differentiated cells
4
stem cell
Organ
463
liver
209
pancreas
96
connective tissue
60
blood
60
bodily fluid
42
adipose tissue
27
embryo
22
spleen
19
epithelium
12
brain
Project
937
AMP
Genome assembly (visualization)
779
hg19
713
GRCh38
5
hg18
Lab
911
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
45
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
files.file_type!
bigBed bedMethyl
organ_slims!
eye
BIOSAMPLE
ASSAY
937 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
GRO-seq
FAIRE-seq
WGBS
Hi-C
pCHi-C
cell line
HepG2
360
5
1
GM12878
60
tissue
islet of Langerhans
28
97
20
1
6
1
liver
67
2
1
body of pancreas
33
4
2
spleen
20
1
1
pancreas
16
1
+ See 7 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 7 more…
stem cell
hESC
3
1
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