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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
156
ChIP-seq
Assay category
156
DNA binding
Target of assay
449
transcription factor
157
histone modification
156
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
64
August, 2017
31
December, 2017
16
February, 2018
16
October, 2018
15
November, 2017
7
January, 2019
7
October, 2017
Available data
638
bigWig
634
bed narrowPeak
581
bam
344
bigBed narrowPeak
223
tagAlign
156
fastq
49
bed broadPeak
22
bed bed3+
14
bigBed broadPeak
1
tagAlign bed3+
Organism
150
Homo sapiens
Biosample type
primary cell
73
tissue
65
in vitro differentiated cells
16
cell line
2
stem cell
Organ
44
liver
42
pancreas
26
connective tissue
14
epithelium
12
embryo
7
brain
6
spleen
1
adipose tissue
1
blood
1
bodily fluid
Project
156
AMP
Genome assembly (visualization)
154
hg19
152
GRCh38
Lab
156
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
26
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
lab.title!
Mark McCarthy, Oxford
month_released!
April, 2020
BIOSAMPLE
ASSAY
156 results
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Clear Filters
ChIP-seq
tissue
body of pancreas
16
islet of Langerhans
14
liver
12
pancreas
12
brain
7
+ See 3 more…
in vitro differentiated cells
adipocyte
25
hepatocyte
12
pancreatic endoderm
10
definitive endodermal cell
4
primitive gut cell
4
+ See 5 more…
cell line
HepG2
15
GM12878
1
stem cell
hESC
2
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