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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
726
ChIP-seq
111
total RNA-seq
10
DNase-seq
8
WGBS
7
ATAC-seq
6
single cell RNA-seq
5
GRO-seq
3
RRBS
2
FAIRE-seq
1
Hi-C
Assay category
726
DNA binding
117
Transcription
19
DNA accessibility
11
DNA methylation
1
3D chromatin structure
Target of assay
432
transcription factor
156
histone modification
155
histone
133
control
85
broad histone mark
82
recombinant protein
79
RNA binding protein
69
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
315
November, 2017
211
August, 2017
94
December, 2017
86
November, 2018
39
February, 2018
35
December, 2018
35
October, 2018
30
January, 2019
15
October, 2017
6
April, 2018
6
September, 2017
5
January, 2018
2
July, 2018
Available data
2318
bam
2048
bigWig
1349
bed narrowPeak
923
bigBed narrowPeak
921
tsv
879
fastq
290
tagAlign
268
bed broadPeak
234
bigBed broadPeak
228
bed bed3+
95
txt
24
bed bedMethyl
24
bigBed bedMethyl
16
bedpe bed3+
14
hic
11
bed bed3
6
csv
4
bed bedgraph
3
tar
2
ibed
1
hdf5
1
tagAlign bed3+
Organism
872
Homo sapiens
Biosample type
427
cell line
308
tissue
primary cell
140
in vitro differentiated cells
4
stem cell
Organ
465
liver
187
pancreas
98
connective tissue
60
blood
60
bodily fluid
adipose tissue
27
embryo
24
spleen
19
epithelium
12
brain
2
musculature of body
Project
879
AMP
Genome assembly (visualization)
742
hg19
698
GRCh38
5
hg18
Lab
879
AMP-T2D consortium
24
Kyle Gaulton, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
33
missing controlled_by
Audit category:
51
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
biosample_type!
primary cell
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
879 results
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ChIP-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
cell line
HepG2
360
5
1
1
GM12878
60
tissue
islet of Langerhans
28
91
1
6
1
liver
67
2
1
1
body of pancreas
33
2
2
4
spleen
20
1
2
1
pancreas
16
2
1
+ See 4 more…
in vitro differentiated cells
adipocyte
53
1
pancreatic endoderm
18
4
1
hepatocyte
15
definitive endodermal cell
8
2
1
primitive gut cell
8
2
1
+ See 6 more…
stem cell
hESC
3
1
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