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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
449
ChIP-seq
Assay category
449
DNA binding
Target of assay
449
transcription factor
157
histone modification
histone
152
control
85
broad histone mark
84
RNA binding protein
82
recombinant protein
70
narrow histone mark
35
chromatin remodeller
5
other context
5
other post-translational modification
Date released
241
November, 2017
64
November, 2018
45
August, 2017
42
December, 2017
28
December, 2018
15
October, 2018
14
January, 2019
Available data
486
bigWig
475
bam
459
bed narrowPeak
449
fastq
395
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
19
bed bed3+
9
tagAlign
3
tar
Organism
449
Homo sapiens
Biosample type
337
cell line
79
tissue
33
in vitro differentiated cells
primary cell
Organ
327
liver
51
blood
51
bodily fluid
39
connective tissue
17
adipose tissue
17
pancreas
6
spleen
3
embryo
2
epithelium
Project
449
AMP
Genome assembly (visualization)
440
hg19
408
GRCh38
Lab
449
AMP-T2D consortium
Audit category:
28
inconsistent control
Audit category:
35
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
biosample_type!
primary cell
target.investigated_as!
histone
nucleotide modification
BIOSAMPLE
ASSAY
449 results
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Clear Filters
ChIP-seq
cell line
HepG2
286
GM12878
51
tissue
liver
37
white adipose tissue
12
body of pancreas
9
islet of Langerhans
7
spleen
6
+ See 4 more…
in vitro differentiated cells
adipocyte
22
pancreatic endoderm
3
Posterior foregut
2
definitive endodermal cell
2
hepatocyte
2
+ See 1 more…
See all biosamples
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