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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 763ChIP-seq
  • 117total RNA-seq
  • 29ATAC-seq
  • 11DNase-seq
  • 11WGBS
  • 6single cell RNA-seq
  • 5GRO-seq
  • 3RRBS
  • 2FAIRE-seq
  • 1Hi-C
  • 1pCHi-C
Assay category
  • 763DNA binding
  • 123Transcription
  • 42DNA accessibility
  • 14DNA methylation
  • 13D chromatin structure
Target of assay
  • 449transcription factor
  • 157histone modification
  • 156histone
  • 152control
  • 85broad histone mark
  • 84RNA binding protein
  • 82recombinant protein
  • 70narrow histone mark
  • 35chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 315November, 2017
  • 229August, 2017
  • 94December, 2017
  • 87November, 2018
  • 58October, 2018
  • 39February, 2018
  • 35December, 2018
  • 30January, 2019
  • 24May, 2022
  • 17October, 2017
  • 6April, 2018
  • 6September, 2017
  • 5January, 2018
  • 2July, 2018
  • 1August, 2018
  • 1March, 2019
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1331tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 237bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1tbi
  • 1vcf
Organism
  • 942Homo sapiens
Biosample type
  • 427cell line
  • primary cell
  • 377tissue
  • 141in vitro differentiated cells
  • 4stem cell
Organ
  • 465liver
  • 213pancreas
  • 98connective tissue
  • 60blood
  • 60bodily fluid
  • 44adipose tissue
  • 27embryo
  • 24spleen
  • 19epithelium
  • 12brain
  • 2musculature of body
Project
  • 949AMP
Genome assembly (visualization)
  • 782hg19
  • 722GRCh38
  • 5hg18
Lab
  • 923AMP-T2D consortium
  • 24Kyle Gaulton, UCSD
  • 1Mark McCarthy, Oxford
  • 1Stephen Parker, UMich
Audit category:
  • 28inconsistent control
  • 4inconsistent ontology term
Audit category:
  • 45missing controlled_by
Audit category:
  • 51inconsistent control read length
  • 8inconsistent control run_type
  • 1inconsistent assembly
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

949 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
GRO-seq
RRBS
FAIRE-seq
Hi-C
pCHi-C
cell line
HepG2360511
GM1287860
tissue
islet of Langerhans289720161
liver67211
body of pancreas33422
spleen20112
pancreas1621
in vitro differentiated cells
adipocyte531
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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