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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
August, 2021
2
November, 2019
1
March, 2019
Available data
2672
bam
2454
bigWig
1411
bed narrowPeak
1149
tsv
949
fastq
933
bigBed narrowPeak
278
tagAlign
273
bed broadPeak
236
bigBed broadPeak
234
bed bed3+
26
bed bedMethyl
26
bigBed bedMethyl
17
bedpe bed3+
16
txt
15
hic
7
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
Organism
15
Homo sapiens
Biosample type
10
tissue
primary cell
4
in vitro differentiated cells
1
cell line
Organ
4
pancreas
3
heart
2
musculature of body
1
blood vessel
1
epithelium
1
liver
1
vasculature
Project
15
AMP
Genome assembly (visualization)
15
hg19
Lab
14
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
5
inconsistent ontology term
biosample_type!
primary cell
month_released!
August, 2021
May, 2023
organ_slims!
bone element
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 3 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
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