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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
Hi-C
Assay category
15
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
2
August, 2021
November, 2019
1
March, 2019
Available data
2561
bam
2362
bigWig
1322
bed narrowPeak
1310
tsv
949
fastq
770
bigBed narrowPeak
298
tagAlign
161
txt
110
bed broadPeak
73
bed bed3+
73
bigBed broadPeak
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
17
bedpe bed3+
15
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
15
Homo sapiens
Biosample type
10
tissue
primary cell
4
in vitro differentiated cells
1
cell line
Organ
3
heart
2
liver
2
musculature of body
2
pancreas
1
blood vessel
1
kidney
1
vasculature
Project
15
AMP
Genome assembly (visualization)
15
hg19
Lab
12
AMP-T2D consortium
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
4
inconsistent ontology term
biosample_type!
primary cell
month_released!
June, 2019
November, 2019
BIOSAMPLE
ASSAY
15 results
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Hi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
HepG2
1
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