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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 17Hi-C
Assay category
  • 173D chromatin structure
Date released
  • 9March, 2020
  • 3October, 2019
  • 2August, 2021
  • 2November, 2019
  • 1March, 2019
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 17Homo sapiens
Biosample type
  • 11tissue
  • primary cell
  • 4in vitro differentiated cells
  • 2cell line
Organ
  • 4pancreas
  • 3heart
  • 2liver
  • 2musculature of body
  • 1blood vessel
  • 1epithelium
  • 1kidney
  • 1vasculature
Project
  • 17AMP
Genome assembly (visualization)
  • 17hg19
Lab
  • 14AMP-T2D consortium
  • 2Bing Ren, UCSD
  • 1Katalin Susztak, Upenn
Audit category:
  • 5inconsistent ontology term
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

17 results

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Clear Filters
Hi-C
tissue
islet of Langerhans2
psoas muscle2
aorta1
heart1
heart left ventricle1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)2
cardiac precursors (cardiac muscle cell)1
lymphocyte of B lineage (iPSC)1
cell line
EndoC_BH11
HepG21
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