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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
232
ChIP-seq
Assay category
232
DNA binding
Target of assay
157
histone
157
histone modification
106
narrow histone mark
66
control
51
broad histone mark
9
transcription factor
Date released
67
August, 2017
50
May, 2020
49
October, 2019
24
November, 2017
20
August, 2021
8
February, 2021
8
October, 2017
6
May, 2021
Available data
2759
bam
2536
bigWig
1484
bed narrowPeak
1330
tsv
bigBed narrowPeak
925
fastq
298
tagAlign
273
bed broadPeak
236
bigBed broadPeak
235
bed bed3+
154
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
231
Homo sapiens
Biosample type
181
tissue
primary cell
40
in vitro differentiated cells
11
cell line
Organ
73
liver
67
brain
22
connective tissue
15
musculature of body
13
pancreas
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
232
AMP
Genome assembly (visualization)
113
hg19
82
GRCh38
Lab
232
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
biosample_type!
primary cell
files.file_type!
bigBed narrowPeak
month_released!
May, 2022
organ_slims!
pericardium
BIOSAMPLE
ASSAY
232 results
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Clear Filters
ChIP-seq
tissue
liver
70
skeletal muscle tissue
15
islet of Langerhans
9
brain
8
cingulate gyrus
8
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
smooth muscle cell of the coronary artery
6
HepG2
3
iPSC derived cell line
2
See all biosamples
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