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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
202
ChIP-seq
Assay category
202
DNA binding
Target of assay
223
histone
223
histone modification
127
narrow histone mark
broad histone mark
66
control
9
transcription factor
Date released
50
May, 2020
49
October, 2019
37
November, 2017
34
August, 2017
14
August, 2021
8
February, 2021
6
May, 2021
4
October, 2017
Available data
2505
bam
2247
bigWig
1330
tsv
1214
bed narrowPeak
864
fastq
712
bigBed narrowPeak
245
bed broadPeak
228
bigBed broadPeak
225
bed bed3+
202
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
199
Homo sapiens
Biosample type
162
tissue
primary cell
26
in vitro differentiated cells
14
cell line
Organ
73
brain
65
liver
11
pancreas
10
connective tissue
7
musculature of body
6
artery
6
blood vessel
6
heart
6
vasculature
4
adipose tissue
3
epithelium
1
pituitary gland
Project
202
AMP
Genome assembly (visualization)
105
hg19
97
GRCh38
Lab
202
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
5
inconsistent control read length
biosample_type!
primary cell
files.file_type!
zippedFastqFolder
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
202 results
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Clear Filters
ChIP-seq
tissue
liver
59
substantia nigra
8
caudate nucleus
7
cingulate gyrus
7
layer of hippocampus
7
+ See 43 more…
in vitro differentiated cells
neural progenitor cell
14
adipocyte
6
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
6
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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