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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
284
ChIP-seq
Assay category
284
DNA binding
Target of assay
211
histone
211
histone modification
125
narrow histone mark
86
broad histone mark
64
control
9
transcription factor
Date released
78
November, 2017
73
August, 2017
50
May, 2020
49
October, 2019
20
August, 2021
October, 2017
8
February, 2021
6
May, 2021
Available data
2768
bam
2537
bigWig
1506
bed narrowPeak
1330
tsv
932
fastq
927
bigBed narrowPeak
284
tagAlign
269
bed broadPeak
236
bigBed broadPeak
234
bed bed3+
158
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
6
csv
4
bed bedgraph
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
277
Homo sapiens
Biosample type
224
tissue
primary cell
40
in vitro differentiated cells
20
cell line
Organ
104
brain
82
liver
22
connective tissue
19
pancreas
15
musculature of body
8
adipose tissue
6
artery
6
blood vessel
6
heart
6
vasculature
3
epithelium
1
pituitary gland
Project
284
AMP
Genome assembly (visualization)
142
GRCh38
133
hg19
Lab
284
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
11
inconsistent control read length
1
inconsistent assembly
biosample_type!
primary cell
lab.title!
Struan F.A. Grant, CHOP
month_released!
October, 2017
BIOSAMPLE
ASSAY
284 results
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Clear Filters
ChIP-seq
tissue
liver
70
substantia nigra
16
caudate nucleus
15
layer of hippocampus
15
skeletal muscle tissue
15
+ See 42 more…
in vitro differentiated cells
neural progenitor cell
20
adipocyte
14
cardiomyocytes
3
pancreatic PP cell
3
cell line
HepG2
12
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
See all biosamples
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