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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1165total RNA-seq
  • 111single cell RNA-seq
  • 31pCHi-C
  • 16small RNA-seq
  • 3snDrop-seq
  • 2ATAC-seq
  • 2RNA microarray
Assay category
  • 1292Transcription
  • 2DNA accessibility
Date released
  • 552February, 2021
  • 144May, 2020
  • 123August, 2021
  • 121May, 2021
  • 116July, 2018
  • 89August, 2017
  • 47July, 2019
  • 45March, 2020
  • 25February, 2020
  • 20November, 2019
  • 15February, 2018
  • 14October, 2019
  • 6April, 2018
  • 5January, 2019
  • 4December, 2019
  • 4February, 2023
Available data
  • 2783bam
  • 2556bigWig
  • 1522bed narrowPeak
  • 1330tsv
  • 949fastq
  • 933bigBed narrowPeak
  • 298tagAlign
  • 273bed broadPeak
  • 236bed bed3+
  • 236bigBed broadPeak
  • 161txt
  • 64xls
  • 26bed bedMethyl
  • 26bigBed bedMethyl
  • 19bedpe bed3+
  • 17hic
  • 11bed bed3
  • 7bed bedgraph
  • 6csv
  • 3tar
  • 2ibed
  • 1bedpe
  • 1hdf5
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 1330Homo sapiens
Biosample type
  • 1076tissue
  • primary cell
  • 131in vitro differentiated cells
  • 119cell line
  • 4stem cell
Organ
  • 463connective tissue
  • 399adipose tissue
  • 309pancreas
  • 169liver
  • 164heart
  • 66blood vessel
  • 66vasculature
  • 58bone element
  • 56artery
  • 40epithelium
  • 23brain
  • 18kidney
  • 14embryo
  • 7limb
  • 7musculature of body
  • 5eye
  • 5nerve
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1mammary gland
  • 1ovary
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 1328AMP
  • 2T1D
Genome assembly (visualization)
  • 1150hg19
  • 1148GRCh38
Lab
  • 1320AMP-T2D consortium
  • 10Bing Ren, UCSD
Audit category:
  • 133inconsistent ontology term
  • 9audit script error
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

1330 results

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Clear Filters
total RNA-seq
single cell RNA-seq
pCHi-C
small RNA-seq
snDrop-seq
ATAC-seq
RNA microarray
tissue
adipose tissue3811
islet of Langerhans26161
liver14711
bone tissue58
heart left ventricle3181
in vitro differentiated cells
cardiomyocytes59
cardiac precursors (cardiac muscle cell)19
induced pluripotent stem cell9
neural progenitor cell7
cardiomyocytes (cardiac muscle cell)321
cell line
smooth muscle cell of the coronary artery52
EndoC_BH1331
HepG2141
H1-hESC8
RCC 7860 vector11
stem cell
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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