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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
67
ATAC-seq
59
total RNA-seq
13
single cell RNA-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
68
DNA accessibility
Date released
121
August, 2021
89
February, 2021
7
February, 2023
7
May, 2022
1
October, 2022
Available data
2365
bam
2112
bigWig
1214
tsv
1197
bed narrowPeak
877
fastq
810
bigBed narrowPeak
252
bed broadPeak
230
bigBed broadPeak
225
bed bed3+
171
tagAlign
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
vcf
Organism
224
Homo sapiens
Biosample type
221
tissue
3
in vitro differentiated cells
1
cell line
Organ
126
kidney
88
bone element
6
pancreas
4
skeleton
1
musculature of body
Project
225
AMP
Genome assembly (visualization)
64
GRCh38
4
hg19
Lab
121
Katalin Susztak, Upenn
95
AMP-T2D consortium
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
biosample_type!
primary cell
month_released!
July, 2018
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
225 results
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RNA microarray
ATAC-seq
total RNA-seq
single cell RNA-seq
MPRA
snATAC-seq
tissue
kidney
64
49
13
bone element
84
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
+ See 3 more…
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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