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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
55
total RNA-seq
13
single cell RNA-seq
3
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
68
Transcription
4
DNA accessibility
Date released
89
February, 2021
57
August, 2021
7
May, 2022
3
February, 2023
1
October, 2022
Available data
2775
bam
2556
bigWig
1514
bed narrowPeak
1329
tsv
949
fastq
933
bigBed narrowPeak
298
tagAlign
273
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
157
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
17
hic
7
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
bedpe
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
156
Homo sapiens
Biosample type
153
tissue
3
in vitro differentiated cells
1
cell line
Organ
88
bone element
62
kidney
6
pancreas
skeleton
1
musculature of body
Project
157
AMP
Genome assembly (visualization)
4
hg19
Lab
91
AMP-T2D consortium
57
Katalin Susztak, Upenn
6
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
85
inconsistent ontology term
6
audit script error
biosample_type!
primary cell
lab.title!
Klaus Kaestner, Upenn
organ_slims!
ovary
skeleton
BIOSAMPLE
ASSAY
157 results
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Clear Filters
RNA microarray
total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
bone element
84
kidney
49
13
islet of Langerhans
6
skeletal muscle tissue
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
cell line
MIN6
1
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