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Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
ChIP-seq
9
total RNA-seq
3
RRBS
Assay category
93
DNA binding
9
Transcription
3
DNA methylation
Target of assay
52
transcription factor
25
histone
25
histone modification
16
control
13
broad histone mark
12
narrow histone mark
7
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
59
November, 2017
33
February, 2018
6
August, 2017
3
December, 2017
2
November, 2018
1
January, 2019
1
October, 2017
Available data
105
fastq
101
bam
89
bigWig
71
bed narrowPeak
55
bigBed narrowPeak
44
bed broadPeak
44
bigBed broadPeak
9
tsv
7
tagAlign
3
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
Organism
105
Homo sapiens
Biosample type
62
cell line
primary cell
33
in vitro differentiated cells
10
tissue
Organ
65
liver
12
embryo
3
pancreas
2
musculature of body
1
blood
1
bodily fluid
1
brain
Project
105
AMP
Genome assembly (visualization)
92
hg19
75
GRCh38
Lab
105
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
10
inconsistent control read length
biosample_type!
primary cell
BIOSAMPLE
ASSAY
105 results
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ChIP-seq
total RNA-seq
RRBS
cell line
HepG2
61
GM12878
1
in vitro differentiated cells
pancreatic endoderm
9
3
endocrine cell
3
2
definitive endodermal cell
3
1
embryonic stem cell
3
1
posterior foregut
3
1
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tissue
liver
3
1
islet of Langerhans
3
skeletal muscle tissue
2
brain
1
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