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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 93ChIP-seq
  • 9total RNA-seq
  • 3RRBS
Assay category
  • 93DNA binding
  • 9Transcription
  • 3DNA methylation
Target of assay
  • 52transcription factor
  • 25histone
  • 25histone modification
  • 16control
  • 13broad histone mark
  • 12narrow histone mark
  • 7RNA binding protein
  • 5chromatin remodeller
  • 1other context
  • 1other post-translational modification
Date released
  • 59November, 2017
  • 33February, 2018
  • 6August, 2017
  • 3December, 2017
  • 2November, 2018
  • 1January, 2019
  • 1October, 2017
Available data
  • 105fastq
  • 101bam
  • 89bigWig
  • 71bed narrowPeak
  • 55bigBed narrowPeak
  • 44bed broadPeak
  • 44bigBed broadPeak
  • 9tsv
  • 7tagAlign
  • 3bed bed3+
  • 3bed bedMethyl
  • 3bigBed bedMethyl
Organism
  • 105Homo sapiens
Biosample type
  • 62cell line
  • primary cell
  • 33in vitro differentiated cells
  • 10tissue
Organ
  • 65liver
  • 12embryo
  • 3pancreas
  • 2musculature of body
  • 1blood
  • 1bodily fluid
  • 1brain
Project
  • 105AMP
Genome assembly (visualization)
  • 92hg19
  • 75GRCh38
Lab
  • 105AMP-T2D consortium
Audit category:
  • 3missing controlled_by
Audit category:
  • 10inconsistent control read length
biosample_type!
  • primary cell
BIOSAMPLE
ASSAY

105 results

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Clear Filters
ChIP-seq
total RNA-seq
RRBS
cell line
HepG261
GM128781
in vitro differentiated cells
pancreatic endoderm93
endocrine cell32
definitive endodermal cell31
embryonic stem cell31
posterior foregut31
tissue
liver31
islet of Langerhans3
skeletal muscle tissue2
brain1
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